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biopet.biopet
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e35cb52572d8a342a4940803c73b3a3878851473
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Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
Tags
19
v0.9.0
v0.8.0
BIOS
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.4.0-RC2
v0.4.0-RC1
v0.3.2
v0.3.1
v0.3.0
v0.2.0
start-feature-branching
v0.1.4
v0.1.2
v0.1.1
v0.1.0
0.1.0
31 results
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Created with Raphaël 2.2.0
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Update default memory settings
Update Gentrap test for compatibility with new reference
Update BamMetrics RNA mode and its tests
Style updates
Rename SeqStat in summary for consistency
Update 'num_qual_gte' to 'num_qual' array
Remove 'num_n' in base stats since we already have 'nucleotides.N'
Rename Seqstat -> SeqStat
Cleanup + style updates
Add step for merging unmapped and mapped tophat alignment files
Add missing stats display in Gentrap report
variant messages
insert size messages
Initial Gentrap update to use new Metrics module
proper alignment summaries
move to top dir instead of tools
added preliminary version of release notes
added preliminary version of release notes
Remove test code
Added initial version of gentrap report
Fix pipeline name
Fix for NullPointer exception error in #156
Moved sample metrics to other directory
Revert phase change in Maven since we use the correct Option now
Revert phase change in Maven since we use the correct Option now
Adding metrics step on merged bam file
Wrap Picard dependency list fetch in Option
Use 'compile' phase for pulling Picard version
Use new reference module in Gentrap
Wrap Picard dependency list fetch in Option
adding carp report to the pipeline
Fixed file name
Adding carp report
Use 'compile' phase for pulling Picard version
Merge branch 'develop' into feature-gentrap_additions
Merge remote-tracking branch 'origin/master' into develop
Merge branch 'develop' into feature-gentrap_additions
Bump version to 0.3.2
v0.3.2
v0.3.2
Fix bug causing missing fragment count row
Make numHeaderLines default to 0 in tool and be explicit in Gentrap
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