diff --git a/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepInputfiles.ssp b/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepInputfiles.ssp index ced6349bb7752fc5a86df328f2216f6650a1aaef..0ecc838cc733dd80d04455060071e6295246175e 100644 --- a/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepInputfiles.ssp +++ b/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepInputfiles.ssp @@ -17,16 +17,16 @@ val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString def removeDir(value: Option[Any]): Option[Any] = { value.collect { case a => - if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir) + if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator) else a } } }# -<table class="table sortable-theme-bootstrap" data-sortable> +<table class="table"> <thead><tr> - <th data-sorted="true" data-sorted-direction="ascending">Sample</th> + <th>Sample</th> <th colspan="2">Library</th> <th>Path</th> <th>MD5</th> diff --git a/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp b/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp index 439fa99f6b0b206e8898ad39deea447ad28aff30..3807e6c8790c21948927f3e25323d59bc620eee0 100644 --- a/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp +++ b/public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp @@ -17,16 +17,16 @@ val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString def removeDir(value: Option[Any]): Option[Any] = { value.collect { case a => - if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir) + if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator) else a } } }# -<table class="table sortable-theme-bootstrap" data-sortable> +<table class="table"> <thead><tr> - <th data-sorted="true" data-sorted-direction="ascending">Sample</th> + <th>Sample</th> <th colspan="2">Library</th> <th>Path</th> <th>MD5</th> diff --git a/public/mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp b/public/mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp index 3c9926d4e4dd9234ee25a87ca4cf1a5df38f3a78..d35962f5d53969c6d04700d9c1a76f747bc3b239 100644 --- a/public/mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp +++ b/public/mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp @@ -20,7 +20,7 @@ val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString def removeDir(value: Option[Any]): Option[Any] = { value.collect { case a => - if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir) + if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator) else a } } @@ -28,9 +28,9 @@ <div class="panel-body"> <!-- Table --> -<table class="table sortable-theme-bootstrap" data-sortable> +<table class="table"> <thead><tr> - <th data-sorted="true" data-sorted-direction="ascending">Sample</th> + <th>Sample</th> #if (!sampleLevel) <th>Library</th> #end <th>Path</th> <th>MD5</th> diff --git a/public/shiva/src/main/resources/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp b/public/shiva/src/main/resources/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp index 3514498749d8c55e7b6839263875e31a3aa3b877..bd00a8618bee788821e683ac9c32f6837d3c6464 100644 --- a/public/shiva/src/main/resources/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp +++ b/public/shiva/src/main/resources/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp @@ -13,7 +13,7 @@ val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString def removeDir(value: Option[Any]): Option[Any] = { value.collect { case a => - if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir) + if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator) else a } } @@ -21,7 +21,7 @@ <div class="panel-body"> <!-- Table --> -<table class="table sortable-theme-bootstrap" data-sortable> +<table class="table"> <thead><tr> <th>Variantcaller</th> <th>Path</th>