Commit de6f2bdc authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix style

parent dd163178
...@@ -75,7 +75,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction => ...@@ -75,7 +75,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
override def freezeFieldValues() { override def freezeFieldValues() {
this match { this match {
case r:Reference => case r: Reference =>
if (r.dictRequired) deps :+= r.referenceDict if (r.dictRequired) deps :+= r.referenceDict
if (r.faiRequired) deps :+= r.referenceFai if (r.faiRequired) deps :+= r.referenceFai
deps = deps.distinct deps = deps.distinct
......
...@@ -19,7 +19,7 @@ import java.io.File ...@@ -19,7 +19,7 @@ import java.io.File
import nl.lumc.sasc.biopet.core.Reference import nl.lumc.sasc.biopet.core.Reference
import nl.lumc.sasc.biopet.utils.config.Configurable import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{Input, Output} import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
/** Extension for picard SortVcf */ /** Extension for picard SortVcf */
class SortVcf(val root: Configurable) extends Picard with Reference { class SortVcf(val root: Configurable) extends Picard with Reference {
......
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