From de6f2bdcda5963f9a5414da804f242047967c459 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 5 Apr 2016 13:02:49 +0200
Subject: [PATCH] Fix style
---
.../nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala | 2 +-
.../scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
index 23122f1e3..a52860864 100644
--- a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
+++ b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
@@ -75,7 +75,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
override def freezeFieldValues() {
this match {
- case r:Reference =>
+ case r: Reference =>
if (r.dictRequired) deps :+= r.referenceDict
if (r.faiRequired) deps :+= r.referenceFai
deps = deps.distinct
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
index 623708024..f3500d047 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
@@ -19,7 +19,7 @@ import java.io.File
import nl.lumc.sasc.biopet.core.Reference
import nl.lumc.sasc.biopet.utils.config.Configurable
-import org.broadinstitute.gatk.utils.commandline.{Input, Output}
+import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
/** Extension for picard SortVcf */
class SortVcf(val root: Configurable) extends Picard with Reference {
--
GitLab