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Commit d58df8a4 authored by bow's avatar bow
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Update Sickle wrapper for consistency

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flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Sickle.scala
+ 6
− 6
View file @ d58df8a4
...@@ -11,25 +11,25 @@ import nl.lumc.sasc.biopet.core.config._ ...@@ -11,25 +11,25 @@ import nl.lumc.sasc.biopet.core.config._
class Sickle(val root: Configurable) extends BiopetCommandLineFunction { class Sickle(val root: Configurable) extends BiopetCommandLineFunction {
@Input(doc = "R1 input") @Input(doc = "R1 input")
var input_R1: File = null var input_R1: File = _
@Input(doc = "R2 input", required = false) @Input(doc = "R2 input", required = false)
var input_R2: File = null var input_R2: File = _
@Input(doc = "qualityType file", required = false) @Input(doc = "qualityType file", required = false)
var qualityTypeFile: File = _ var qualityTypeFile: File = _
@Output(doc = "R1 output") @Output(doc = "R1 output")
var output_R1: File = null var output_R1: File = _
@Output(doc = "R2 output", required = false) @Output(doc = "R2 output", required = false)
var output_R2: File = null var output_R2: File = _
@Output(doc = "singles output", required = false) @Output(doc = "singles output", required = false)
var output_singles: File = null var output_singles: File = _
@Output(doc = "stats output") @Output(doc = "stats output")
var output_stats: File = null var output_stats: File = _
executable = config("exe", default = "sickle") executable = config("exe", default = "sickle")
var qualityType: String = config("qualitytype") var qualityType: String = config("qualitytype")
......
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