Fixed type

carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala

@@ -46,7 +46,7 @@ class Carp(val root: Configurable) extends QScript with MultisampleMappingTrait
     "samtoolsview" -> Map("q" -> 10)
   )
 
-  override def fixedValues = Map(
+  override def fixedValues = super.fixedValues ++ Map(
     "samtoolsview" -> Map(
       "h" -> true,
       "b" -> true

mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala

@@ -67,7 +67,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript
 
   override def defaults = super.defaults ++ Map("reordersam" -> Map("allow_incomplete_dict_concordance" -> true))
 
-  override def fixedValues = Map("gearssingle" -> Map("skip_flexiprep" -> true))
+  override def fixedValues: Map[String, Any] = super.fixedValues ++ Map("gearssingle" -> Map("skip_flexiprep" -> true))
 
   /** In a default multisample mapping run there are no multsample jobs. This method can be overriden by other pipelines */
   def addMultiSampleJobs(): Unit = {