Commit cdc1f3c6 authored by Peter van 't Hof's avatar Peter van 't Hof

Fixed type

parent c2fdfed6
......@@ -46,7 +46,7 @@ class Carp(val root: Configurable) extends QScript with MultisampleMappingTrait
"samtoolsview" -> Map("q" -> 10)
)
override def fixedValues = Map(
override def fixedValues = super.fixedValues ++ Map(
"samtoolsview" -> Map(
"h" -> true,
"b" -> true
......
......@@ -67,7 +67,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript
override def defaults = super.defaults ++ Map("reordersam" -> Map("allow_incomplete_dict_concordance" -> true))
override def fixedValues = Map("gearssingle" -> Map("skip_flexiprep" -> true))
override def fixedValues: Map[String, Any] = super.fixedValues ++ Map("gearssingle" -> Map("skip_flexiprep" -> true))
/** In a default multisample mapping run there are no multsample jobs. This method can be overriden by other pipelines */
def addMultiSampleJobs(): Unit = {
......
Markdown is supported
0%
or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment