Commit c2fdfed6 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Force no flexiprep in gears

parent fcecdf0c
......@@ -67,6 +67,8 @@ trait MultisampleMappingTrait extends MultiSampleQScript
override def defaults = super.defaults ++ Map("reordersam" -> Map("allow_incomplete_dict_concordance" -> true))
override def fixedValues = Map("gearssingle" -> Map("skip_flexiprep" -> true))
/** In a default multisample mapping run there are no multsample jobs. This method can be overriden by other pipelines */
def addMultiSampleJobs(): Unit = {
// this code will be executed after all code of all samples is executed
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