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biopet.biopet
Commits
c2fdfed6
Commit
c2fdfed6
authored
Aug 09, 2016
by
Peter van 't Hof
Browse files
Force no flexiprep in gears
parent
fcecdf0c
Changes
1
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Inline
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mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMapping.scala
View file @
c2fdfed6
...
...
@@ -67,6 +67,8 @@ trait MultisampleMappingTrait extends MultiSampleQScript
override
def
defaults
=
super
.
defaults
++
Map
(
"reordersam"
->
Map
(
"allow_incomplete_dict_concordance"
->
true
))
override
def
fixedValues
=
Map
(
"gearssingle"
->
Map
(
"skip_flexiprep"
->
true
))
/** In a default multisample mapping run there are no multsample jobs. This method can be overriden by other pipelines */
def
addMultiSampleJobs
()
:
Unit
=
{
// this code will be executed after all code of all samples is executed
...
...
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