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biopet.biopet
Commits
cb93552e
Commit
cb93552e
authored
May 24, 2016
by
bow
Browse files
Merge branch 'fix-mapping_plot' into 'develop'
Fix mapping plot in report Fixes #349 See merge request !411
parents
160ed2d3
00bf2bf3
Changes
1
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bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
View file @
cb93552e
...
...
@@ -127,9 +127,9 @@ object BammetricsReport extends ReportBuilder {
summary
,
Some
(
sample
),
lib
).
value
.
getOrElse
(
0
).
toString
.
toLong
val
sb
=
new
StringBuffer
()
if
(
lib
.
isDefined
)
sb
.
append
(
sample
+
"-"
+
lib
.
get
+
"\t"
)
else
sb
.
append
(
sample
+
"\t"
)
sb
.
append
((
mapped
-
duplicates
)
+
"\t"
)
sb
.
append
((
mapped
-
duplicates
-
secondary
)
+
"\t"
)
sb
.
append
(
duplicates
+
"\t"
)
sb
.
append
((
total
-
mapped
-
secondary
)
+
"\t"
)
sb
.
append
((
total
-
mapped
)
+
"\t"
)
sb
.
append
(
secondary
)
sb
.
toString
}
...
...
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