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biopet.biopet
Commits
00bf2bf3
Commit
00bf2bf3
authored
May 23, 2016
by
Peter van 't Hof
Browse files
Fix mapping plot in report
parent
160ed2d3
Changes
1
Hide whitespace changes
Inline
Side-by-side
bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
View file @
00bf2bf3
...
...
@@ -127,9 +127,9 @@ object BammetricsReport extends ReportBuilder {
summary
,
Some
(
sample
),
lib
).
value
.
getOrElse
(
0
).
toString
.
toLong
val
sb
=
new
StringBuffer
()
if
(
lib
.
isDefined
)
sb
.
append
(
sample
+
"-"
+
lib
.
get
+
"\t"
)
else
sb
.
append
(
sample
+
"\t"
)
sb
.
append
((
mapped
-
duplicates
)
+
"\t"
)
sb
.
append
((
mapped
-
duplicates
-
secondary
)
+
"\t"
)
sb
.
append
(
duplicates
+
"\t"
)
sb
.
append
((
total
-
mapped
-
secondary
)
+
"\t"
)
sb
.
append
((
total
-
mapped
)
+
"\t"
)
sb
.
append
(
secondary
)
sb
.
toString
}
...
...
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