From c3c0fc09f167fa4fdb347e565d473943fdbcd474 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 19 Aug 2015 09:43:06 +0200
Subject: [PATCH] Fixed typo
---
.../scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
index a1ace7428..0f0e11c62 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
@@ -46,13 +46,13 @@ object SamplesTsvToJson extends ToolCommand {
val header = lines.head.split("\t")
val sampleColumn = header.indexOf("sample")
val libraryColumn = header.indexOf("library")
- if (sampleColumn == -1) throw new IllegalStateException("sample column does not exist in: " + inputFile)
+ if (sampleColumn == -1) throw new IllegalStateException("Sample column does not exist in: " + inputFile)
val sampleLibCache: mutable.Set[(String, Option[String])] = mutable.Set()
val librariesValues: List[Map[String, Any]] = for (tsvLine <- lines.tail) yield {
val values = tsvLine.split("\t")
- require(header.length == values.length, "Number columns is not the same as the header")
+ require(header.length == values.length, "Number of columns is not the same as the header")
val sample = values(sampleColumn)
val library = if (libraryColumn != -1) Some(values(libraryColumn)) else None
--
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