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Commit c1f0eacf authored by Sander Bollen's avatar Sander Bollen
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fix #348

parent 9139289c
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mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
+ 1
− 1
View file @ c1f0eacf
...@@ -125,7 +125,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S ...@@ -125,7 +125,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
"skip_markduplicates" -> skipMarkduplicates, "skip_markduplicates" -> skipMarkduplicates,
"aligner" -> aligner, "aligner" -> aligner,
"chunking" -> chunking, "chunking" -> chunking,
"numberChunks" -> (if (chunking) numberChunks.getOrElse(1) else None) "number_of_chunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
) ++ (if (root == null) Map("reference" -> referenceSummary) else Map()) ) ++ (if (root == null) Map("reference" -> referenceSummary) else Map())
override def reportClass = { override def reportClass = {
......
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