From c1f0eacf44ec05313eced2a3e669f1b9e7a58442 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Mon, 23 May 2016 15:49:02 +0200
Subject: [PATCH] fix #348
---
.../scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
index 838de935f..912027fcd 100644
--- a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
+++ b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
@@ -125,7 +125,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
"skip_markduplicates" -> skipMarkduplicates,
"aligner" -> aligner,
"chunking" -> chunking,
- "numberChunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
+ "number_of_chunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
) ++ (if (root == null) Map("reference" -> referenceSummary) else Map())
override def reportClass = {
--
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