Commit 1261f884 authored by Moustakas's avatar Moustakas
Browse files

Added text in the options parser

parent 90e274fe
......@@ -38,13 +38,13 @@ object BaseCounter extends ToolCommand {
class OptParser extends AbstractOptParser {
opt[File]('r', "refFlat") required () valueName "<file>" action { (x, c) =>
c.copy(refFlat = x)
}
} text "refFlat file. Mandatory"
opt[File]('o', "outputDir") required () valueName "<directory>" action { (x, c) =>
c.copy(outputDir = x)
}
} text "Output directory. Mandatory"
opt[File]('b', "bam") required () valueName "<file>" action { (x, c) =>
c.copy(bamFile = x)
}
} text "Bam file. Mandatory"
opt[String]('p', "prefix") valueName "<prefix>" action { (x, c) =>
c.copy(prefix = x)
}
......
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