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biopet.biopet
Commits
bdc61e74
Commit
bdc61e74
authored
Feb 15, 2015
by
bow
Browse files
Use null explicitly
parent
d56e84e3
Changes
1
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Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
View file @
bdc61e74
...
...
@@ -34,22 +34,22 @@ class FastqSync(val root: Configurable) extends BiopetJavaCommandLineFunction {
javaMainClass
=
getClass
.
getName
@Input
(
doc
=
"Original FASTQ file (read 1 or 2)"
,
shortName
=
"r"
,
required
=
true
)
var
refFastq
:
File
=
_
var
refFastq
:
File
=
null
@Input
(
doc
=
"Input read 1 FASTQ file"
,
shortName
=
"i"
,
required
=
true
)
var
inputFastq1
:
File
=
_
var
inputFastq1
:
File
=
null
@Input
(
doc
=
"Input read 2 FASTQ file"
,
shortName
=
"j"
,
required
=
true
)
var
inputFastq2
:
File
=
_
var
inputFastq2
:
File
=
null
@Output
(
doc
=
"Output read 1 FASTQ file"
,
shortName
=
"o"
,
required
=
true
)
var
outputFastq1
:
File
=
_
var
outputFastq1
:
File
=
null
@Output
(
doc
=
"Output read 2 FASTQ file"
,
shortName
=
"p"
,
required
=
true
)
var
outputFastq2
:
File
=
_
var
outputFastq2
:
File
=
null
@Output
(
doc
=
"Sync statistics"
,
required
=
true
)
var
outputStats
:
File
=
_
var
outputStats
:
File
=
null
// executed command line
override
def
commandLine
=
...
...
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