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biopet.biopet
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bdc61e748599aef754eed07c8bbce6610b024aa5
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12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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19
v0.9.0
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31 results
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Created with Raphaël 2.2.0
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Disable untested expMeasure modes
Expose enum-based config values as public attributes
Formatting updates
Add variant calling jobs and expose its output as attribute and in summary
Add extension for simple RNA variant calling
Add fix_mpileup.py script for VarScan
Add VarScan mpileup2cns wrapper
Add VarScan base wrapper
Add default value to SamtoolsMpileup.disableBaq
Add -s and -d flag to SamtoolsMpileup
Initial tabix wrapper
Add GatherBamFiles wrapper
Fix bug that omits md5sum calculation of Flexiprep files
Use GatherBam for merging per-strand jobs
Fix version
Use correct conditional for optional strand-specific jobs
Use correct flag repetition for SamtoolsView
Version
fix on missing AD field
Fix chromosome stats
Added todo
Add strand-specific jobs
fix version
fix executable
added bgzip and tabix to freebayes
Added index as input file
Added tabix
Properly enclose outputs in RawBaseCounter
Rename Ln.out => Ln.output and Ln.in => Ln.input
Add wrapper for bgzip
Add isoforms output to summary
changes in output folder of MACS single sample runs
Switched Basty to Shiva
fix bug
Add wrapper for bgzip
Remove default value from expressionMeasures option
Use '0' as fallback character when merging tables of counts
Refactor Ln-or-MergeSamFiles job into a single factory function
Use symlink for strand-separation jobs for single-strand samples
Formatting updates and `add` function call update
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