Commit b9f9c369 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed mother and father key

parent 2c7bb613
...@@ -94,7 +94,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript => ...@@ -94,7 +94,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript =>
} }
lazy val father = { lazy val father = {
val g: Option[String] = config("gender", sample = sampleId, library = null) val g: Option[String] = config("father", sample = sampleId, library = null)
g.foreach { father => g.foreach { father =>
if (sampleId != father) Logging.addError(s"Father for $sampleId can not be itself") if (sampleId != father) Logging.addError(s"Father for $sampleId can not be itself")
if (samples.contains(father)) if (samples(father).gender == Gender.Male) if (samples.contains(father)) if (samples(father).gender == Gender.Male)
...@@ -105,7 +105,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript => ...@@ -105,7 +105,7 @@ trait MultiSampleQScript extends SummaryQScript { qscript: QScript =>
} }
lazy val mother = { lazy val mother = {
val g: Option[String] = config("gender", sample = sampleId, library = null) val g: Option[String] = config("mother", sample = sampleId, library = null)
g.foreach { mother => g.foreach { mother =>
if (sampleId != mother) Logging.addError(s"mother for $sampleId can not be itself") if (sampleId != mother) Logging.addError(s"mother for $sampleId can not be itself")
if (samples.contains(mother)) if (samples(mother).gender == Gender.Female) if (samples.contains(mother)) if (samples(mother).gender == Gender.Female)
......
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