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b7521058

Commit b7521058 authored 10 years ago by bow

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Merge branch 'develop' into feature-wipereads

parents 9c3639f6 35dba66e

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Biopet.iml 13 additions, 0 deletions

Biopet.iml
biopet-framework/BiopetFramework.iml 56 additions, 0 deletions

biopet-framework/BiopetFramework.iml
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala 4 additions, 1 deletion

...ain/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala 2 additions, 0 deletions

...ala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BedToInterval.scala 16 additions, 3 deletions

.../main/scala/nl/lumc/sasc/biopet/tools/BedToInterval.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSplitter.scala 19 additions, 8 deletions

.../main/scala/nl/lumc/sasc/biopet/tools/FastqSplitter.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MpileupToVcf.scala 38 additions, 36 deletions

...c/main/scala/nl/lumc/sasc/biopet/tools/MpileupToVcf.scala

with 148 additions and 48 deletions

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