Commit b4dac971 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Merge branch 'fix_mapping_summary' into 'develop'

fix mapping summary

See #348. Do not merge until shiva summary in shemas repo is done. 

See merge request !409
parents 5f84074b c1f0eacf
......@@ -128,7 +128,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
"skip_markduplicates" -> skipMarkduplicates,
"aligner" -> aligner,
"chunking" -> chunking,
"numberChunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
"number_of_chunks" -> (if (chunking) numberChunks.getOrElse(1) else None)
) ++ (if (root == null) Map("reference" -> referenceSummary) else Map())
override def reportClass = {
......
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