diff --git a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala index b715a9d668aa24fe4a9da3f3a3fda0fee824bd99..b0a435ff2f9084e46e5b526427be7682b819381e 100644 --- a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala +++ b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala @@ -128,7 +128,7 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S "skip_markduplicates" -> skipMarkduplicates, "aligner" -> aligner, "chunking" -> chunking, - "numberChunks" -> (if (chunking) numberChunks.getOrElse(1) else None) + "number_of_chunks" -> (if (chunking) numberChunks.getOrElse(1) else None) ) ++ (if (root == null) Map("reference" -> referenceSummary) else Map()) override def reportClass = {