Commit b4b21a18 authored by Peter van 't Hof's avatar Peter van 't Hof

Fix summary

parent d71e3968
......@@ -45,10 +45,12 @@ class GearsCentrifuge(val root: Configurable) extends QScript with SummaryQScrip
krakenReportJSON.skipNames = config("skipNames", default = false)
add(krakenReportJSON)
addSummarizable(krakenReportJSON, "centrifugereport")
addSummaryJobs()
}
/** Location of summary file */
def summaryFile = new File(outputDir, sampleId.getOrElse("sampleName_unknown") + ".kraken.summary.json")
def summaryFile = new File(outputDir, sampleId.getOrElse("sampleName_unknown") + ".centrifuge.summary.json")
/** Pipeline settings shown in the summary file */
def summarySettings: Map[String, Any] = Map()
......
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