diff --git a/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala b/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala index 06f4a02b3c1cd43cc811e57bdfc72b7104ff0da5..0f0a04d8d7cd129cccf90d3f31ceab09f3ac30e7 100644 --- a/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala +++ b/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala @@ -45,10 +45,12 @@ class GearsCentrifuge(val root: Configurable) extends QScript with SummaryQScrip krakenReportJSON.skipNames = config("skipNames", default = false) add(krakenReportJSON) addSummarizable(krakenReportJSON, "centrifugereport") + + addSummaryJobs() } /** Location of summary file */ - def summaryFile = new File(outputDir, sampleId.getOrElse("sampleName_unknown") + ".kraken.summary.json") + def summaryFile = new File(outputDir, sampleId.getOrElse("sampleName_unknown") + ".centrifuge.summary.json") /** Pipeline settings shown in the summary file */ def summarySettings: Map[String, Any] = Map()