From af59b702fa29f484b9c79f6913047429de5f7131 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 20 Jan 2016 15:59:00 +0100
Subject: [PATCH] Added files to summary
---
.../sasc/biopet/pipelines/gentrap/measures/Measurement.scala | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala
index d08b4ca42..b69846dbb 100644
--- a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala
+++ b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala
@@ -66,7 +66,8 @@ trait Measurement extends SummaryQScript with Reference { qscript: QScript =>
def summarySettings: Map[String, Any] = Map()
/** File to put in the summary for thie pipeline */
- def summaryFiles: Map[String, File] = Map()
+ def summaryFiles: Map[String, File] = Map("merged_table" -> mergedCountFile, "heatmap" -> heatpMap) ++
+ bamFiles.map { case (id, file) => s"input_bam_$id" -> file}
/** Name of summary output file */
def summaryFile: File = new File(outputDir, s"$name.summary.json")
--
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