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ab759337

Commit ab759337 authored 9 years ago by Peter van 't Hof

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Replace getChr for getContig

parent 8360ae8d

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Changes 7

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/AnnotateVcfWithBed.scala 1 addition, 1 deletion

.../scala/nl/lumc/sasc/biopet/tools/AnnotateVcfWithBed.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala 1 addition, 1 deletion

...cala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala 1 addition, 1 deletion

...c/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala 2 additions, 2 deletions

...k/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala 1 addition, 1 deletion

...k/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala 2 additions, 2 deletions

...src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala

with 9 additions and 9 deletions

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