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8360ae8d

Commit 8360ae8d authored 9 years ago by Peter van 't Hof

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Replace getSequence for getContig

parent fa935dce

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Changes 5

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala 1 addition, 1 deletion

...scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala 3 additions, 3 deletions

...k/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala 9 additions, 9 deletions

.../src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastqTest.scala 4 additions, 4 deletions

...a/nl/lumc/sasc/biopet/tools/ExtractAlignedFastqTest.scala
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/WipeReadsTest.scala 9 additions, 9 deletions

.../test/scala/nl/lumc/sasc/biopet/tools/WipeReadsTest.scala

with 26 additions and 26 deletions

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