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Commit aa262bed authored by Peter van 't Hof's avatar Peter van 't Hof
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Style fix

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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/BaseRecalibrator.scala
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...@@ -22,7 +22,7 @@ import nl.lumc.sasc.biopet.utils.config.Configurable ...@@ -22,7 +22,7 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile import org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import org.broadinstitute.gatk.utils.commandline.{ Argument, Gather, Output, Input } import org.broadinstitute.gatk.utils.commandline.{ Argument, Gather, Output, Input }
class BaseRecalibrator(val root: Configurable) extends CommandLineGATK with ScatterGatherableFunction { class BaseRecalibrator(val root: Configurable) extends CommandLineGATK with ScatterGatherableFunction {
def analysis_type = "BaseRecalibrator" def analysis_type = "BaseRecalibrator"
scatterClass = classOf[ContigScatterFunction] scatterClass = classOf[ContigScatterFunction]
setupScatterFunction = { case scatter: GATKScatterFunction => scatter.includeUnmapped = false } setupScatterFunction = { case scatter: GATKScatterFunction => scatter.includeUnmapped = false }
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