Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
aa262bed
Commit
aa262bed
authored
Jun 10, 2016
by
Peter van 't Hof
Browse files
Style fix
parent
d5d6a13d
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/BaseRecalibrator.scala
View file @
aa262bed
...
...
@@ -22,7 +22,7 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
import
org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import
org.broadinstitute.gatk.utils.commandline.
{
Argument
,
Gather
,
Output
,
Input
}
class
BaseRecalibrator
(
val
root
:
Configurable
)
extends
CommandLineGATK
with
ScatterGatherableFunction
{
class
BaseRecalibrator
(
val
root
:
Configurable
)
extends
CommandLineGATK
with
ScatterGatherableFunction
{
def
analysis_type
=
"BaseRecalibrator"
scatterClass
=
classOf
[
ContigScatterFunction
]
setupScatterFunction
=
{
case
scatter
:
GATKScatterFunction
=>
scatter
.
includeUnmapped
=
false
}
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment