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Commit a1c95ef7 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix type on arg

parent 1f7364e0
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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
+ 2
− 2
View file @ a1c95ef7
......@@ -27,10 +27,10 @@ class GatkPipeline(val root: Configurable) extends QScript with MultiSampleQScri
var mergeGvcfs: Boolean = false
@Argument(doc = "Joint variantcalling", shortName = "jointVariantCalling", required = false)
var jointVariantcalling = config("joint_variantcalling", default = false)
var jointVariantcalling: Boolean = config("joint_variantcalling", default = false)
@Argument(doc = "Joint genotyping", shortName = "jointGenotyping", required = false)
var jointGenotyping = config("joint_genotyping", default = false)
var jointGenotyping: Boolean = config("joint_genotyping", default = false)
var singleSampleCalling = config("single_sample_calling", default = true)
var reference: File = config("reference", required = true)
......
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