From a1c95ef78c0515b43a101641a14686527ff81834 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 7 Nov 2014 13:19:55 +0100
Subject: [PATCH] Fix type on arg
---
.../nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
index 7e7f46102..c5bb656d0 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
@@ -27,10 +27,10 @@ class GatkPipeline(val root: Configurable) extends QScript with MultiSampleQScri
var mergeGvcfs: Boolean = false
@Argument(doc = "Joint variantcalling", shortName = "jointVariantCalling", required = false)
- var jointVariantcalling = config("joint_variantcalling", default = false)
+ var jointVariantcalling: Boolean = config("joint_variantcalling", default = false)
@Argument(doc = "Joint genotyping", shortName = "jointGenotyping", required = false)
- var jointGenotyping = config("joint_genotyping", default = false)
+ var jointGenotyping: Boolean = config("joint_genotyping", default = false)
var singleSampleCalling = config("single_sample_calling", default = true)
var reference: File = config("reference", required = true)
--
GitLab