Commit 96c56bc1 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed dir of samtools flagstat

parent 6a4c600a
......@@ -82,7 +82,7 @@ class BamMetrics(val root: Configurable) extends QScript
/** Script to add jobs */
def biopetScript() {
add(SamtoolsFlagstat(this, inputBam, swapExt(outputDir, inputBam, ".bam", ".flagstat")))
add(SamtoolsFlagstat(this, inputBam, outputDir))
val biopetFlagstat = BiopetFlagstat(this, inputBam, outputDir)
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