Commit 6a4c600a authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed args

parent 5bc1ea8e
......@@ -212,8 +212,8 @@ class Bowtie2(val root: Configurable) extends BiopetCommandLineFunction with Ref
conditional(no_head, "--no-head") +
conditional(no_sq, "--no-sq") +
optional("--rg-id", rg_id) +
repeat("--rg", rg)
conditional(omit_sec_seq, "--omit-sec-seq") +
repeat("--rg", rg) +
conditional(omit_sec_seq, "--omit-sec-seq") +
/* Performance */
optional("--threads", threads) +
conditional(reorder, "--reorder") +
......
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