Added summary test

95536e65 · Peter van 't Hof · 9e6d1d88 · 95536e65
Commit 95536e65 authored May 11, 2016 by Peter van 't Hof
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kopisu/src/test/scala/nl/lumc/sasc/biopet/pipelines/kopisu/KopisuTest.scala ...ala/nl/lumc/sasc/biopet/pipelines/kopisu/KopisuTest.scala +1 -0

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--- a/kopisu/src/test/scala/nl/lumc/sasc/biopet/pipelines/kopisu/KopisuTest.scala
+++ b/kopisu/src/test/scala/nl/lumc/sasc/biopet/pipelines/kopisu/KopisuTest.scala
@@ -73,6 +73,7 @@ class KopisuTest extends TestNGSuite with Matchers {
      pipeline.script()

      pipeline.freecMethod.isDefined shouldBe freec
+      pipeline.summarySettings.get("freec_method") shouldBe Some(freec)

      pipeline.functions.count(_.isInstanceOf[FreeC]) shouldBe (if (freec) bams else 0)
      pipeline.functions.count(_.isInstanceOf[FreeCAssessSignificancePlot]) shouldBe (if (freec) bams else 0)