Commit 95536e65 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added summary test

parent 9e6d1d88
...@@ -73,6 +73,7 @@ class KopisuTest extends TestNGSuite with Matchers { ...@@ -73,6 +73,7 @@ class KopisuTest extends TestNGSuite with Matchers {
pipeline.script() pipeline.script()
pipeline.freecMethod.isDefined shouldBe freec pipeline.freecMethod.isDefined shouldBe freec
pipeline.summarySettings.get("freec_method") shouldBe Some(freec)
pipeline.functions.count(_.isInstanceOf[FreeC]) shouldBe (if (freec) bams else 0) pipeline.functions.count(_.isInstanceOf[FreeC]) shouldBe (if (freec) bams else 0)
pipeline.functions.count(_.isInstanceOf[FreeCAssessSignificancePlot]) shouldBe (if (freec) bams else 0) pipeline.functions.count(_.isInstanceOf[FreeCAssessSignificancePlot]) shouldBe (if (freec) bams else 0)
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