Commit 93080450 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix unit test

parent 9b8e7dd8
......@@ -42,19 +42,19 @@ class VcfWithVcfTest extends TestNGSuite with MockitoSugar with Matchers {
@Test def testOutputTypeVcf() = {
val tmp_path = "/tmp/VcfWithVcf_" + rand.nextString(10) + ".vcf"
val arguments = Array("-I", unvepped_path, "-S", vepped_path, "-O", tmp_path, "-f", "CSQ")
val arguments = Array("-I", unvepped_path, "-s", vepped_path, "-o", tmp_path, "-f", "CSQ")
main(arguments)
}
@Test def testOutputTypeVcfGz() = {
val tmp_path = "/tmp/VcfWithVcf_" + rand.nextString(10) + ".vcf.gz"
val arguments = Array("-I", unvepped_path, "-S", vepped_path, "-O", tmp_path, "-f", "CSQ")
val arguments = Array("-I", unvepped_path, "-s", vepped_path, "-o", tmp_path, "-f", "CSQ")
main(arguments)
}
@Test def testOutputTypeBcf() = {
val tmp_path = "/tmp/VcfWithVcf_" + rand.nextString(10) + ".bcf"
val arguments = Array("-I", unvepped_path, "-S", vepped_path, "-O", tmp_path, "-f", "CSQ")
val arguments = Array("-I", unvepped_path, "-s", vepped_path, "-o", tmp_path, "-f", "CSQ")
main(arguments)
}
......
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