From 93080450a5c58c466ff25b0f84edc25115d066e7 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 1 Aug 2015 15:13:40 +0200
Subject: [PATCH] Fix unit test
---
.../scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala
index 4578e3229..75ba6c3ab 100644
--- a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala
+++ b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala
@@ -42,19 +42,19 @@ class VcfWithVcfTest extends TestNGSuite with MockitoSugar with Matchers {
@Test def testOutputTypeVcf() = {
val tmp_path = "/tmp/VcfWithVcf_" + rand.nextString(10) + ".vcf"
- val arguments = Array("-I", unvepped_path, "-S", vepped_path, "-O", tmp_path, "-f", "CSQ")
+ val arguments = Array("-I", unvepped_path, "-s", vepped_path, "-o", tmp_path, "-f", "CSQ")
main(arguments)
}
@Test def testOutputTypeVcfGz() = {
val tmp_path = "/tmp/VcfWithVcf_" + rand.nextString(10) + ".vcf.gz"
- val arguments = Array("-I", unvepped_path, "-S", vepped_path, "-O", tmp_path, "-f", "CSQ")
+ val arguments = Array("-I", unvepped_path, "-s", vepped_path, "-o", tmp_path, "-f", "CSQ")
main(arguments)
}
@Test def testOutputTypeBcf() = {
val tmp_path = "/tmp/VcfWithVcf_" + rand.nextString(10) + ".bcf"
- val arguments = Array("-I", unvepped_path, "-S", vepped_path, "-O", tmp_path, "-f", "CSQ")
+ val arguments = Array("-I", unvepped_path, "-s", vepped_path, "-o", tmp_path, "-f", "CSQ")
main(arguments)
}
--
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