Fixed tests

public/biopet-tools/src/test/resources/flagstat_crossreport.txt

-====
-    Biopet is built on top of GATK Queue for building bioinformatic
-    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
-    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
-    should also be able to execute Biopet tools and pipelines.
-
-    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center
-
-    Contact us at: sasc@lumc.nl
-
-    A dual licensing mode is applied. The source code within this project that are
-    not part of GATK Queue is freely available for non-commercial use under an AGPL
-    license; For commercial users or users who do not want to follow the AGPL
-    license, please contact us to obtain a separate license.
-====
-
 	#1	#2	#3	#4	#5	#6	#7	#8	#9	#10	#11	#12	#13	#14
 #1	1	1	0	1	0	0	0	1	1	1	0	0	0	0
 #2	1	1	0	1	0	0	0	1	1	1	0	0	0	0

public/biopet-tools/src/test/resources/flagstat_crosstrue.txt

-====
-    Biopet is built on top of GATK Queue for building bioinformatic
-    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
-    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
-    should also be able to execute Biopet tools and pipelines.
-
-    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center
-
-    Contact us at: sasc@lumc.nl
-
-    A dual licensing mode is applied. The source code within this project that are
-    not part of GATK Queue is freely available for non-commercial use under an AGPL
-    license; For commercial users or users who do not want to follow the AGPL
-    license, please contact us to obtain a separate license.
-====
-
 	#1	#2	#3	#4	#5	#6	#7	#8	#9	#10	#11	#12	#13	#14
 #1	100.0000%	100.0000%	0.0000%	100.0000%	0.0000%	0.0000%	0.0000%	100.0000%	100.0000%	100.0000%	0.0000%	0.0000%	0.0000%	0.0000%
 #2	100.0000%	100.0000%	0.0000%	100.0000%	0.0000%	0.0000%	0.0000%	100.0000%	100.0000%	100.0000%	0.0000%	0.0000%	0.0000%	0.0000%

public/biopet-tools/src/test/resources/flagstat_report.txt

-====
-    Biopet is built on top of GATK Queue for building bioinformatic
-    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
-    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
-    should also be able to execute Biopet tools and pipelines.
-
-    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center
-
-    Contact us at: sasc@lumc.nl
-
-    A dual licensing mode is applied. The source code within this project that are
-    not part of GATK Queue is freely available for non-commercial use under an AGPL
-    license; For commercial users or users who do not want to follow the AGPL
-    license, please contact us to obtain a separate license.
-====
-
 Number	Total Flags	Fraction	Name
 #1	1	100.0000%	All
 #2	1	100.0000%	Mapped

public/biopet-tools/src/test/resources/flagstat_summary.txt

-====
-    Biopet is built on top of GATK Queue for building bioinformatic
-    pipelines. It is mainly intended to support LUMC SHARK cluster which is running
-    SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
-    should also be able to execute Biopet tools and pipelines.
-
-    Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center
-
-    Contact us at: sasc@lumc.nl
-
-    A dual licensing mode is applied. The source code within this project that are
-    not part of GATK Queue is freely available for non-commercial use under an AGPL
-    license; For commercial users or users who do not want to follow the AGPL
-    license, please contact us to obtain a separate license.
-====
-
 {
     "Duplicates" : 0,
     "NotPrimaryAlignment" : 0,