diff --git a/public/biopet-tools/src/test/resources/flagstat_crossreport.txt b/public/biopet-tools/src/test/resources/flagstat_crossreport.txt index 38f4c9264061cd7af1b185721c15acd683eb7532..74eabb4125ad9351ff4691a7e5cf0fa68282249c 100644 --- a/public/biopet-tools/src/test/resources/flagstat_crossreport.txt +++ b/public/biopet-tools/src/test/resources/flagstat_crossreport.txt @@ -1,19 +1,3 @@ -==== - Biopet is built on top of GATK Queue for building bioinformatic - pipelines. It is mainly intended to support LUMC SHARK cluster which is running - SGE. But other types of HPC that are supported by GATK Queue (such as PBS) - should also be able to execute Biopet tools and pipelines. - - Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center - - Contact us at: sasc@lumc.nl - - A dual licensing mode is applied. The source code within this project that are - not part of GATK Queue is freely available for non-commercial use under an AGPL - license; For commercial users or users who do not want to follow the AGPL - license, please contact us to obtain a separate license. -==== - #1 #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #1 1 1 0 1 0 0 0 1 1 1 0 0 0 0 #2 1 1 0 1 0 0 0 1 1 1 0 0 0 0 diff --git a/public/biopet-tools/src/test/resources/flagstat_crosstrue.txt b/public/biopet-tools/src/test/resources/flagstat_crosstrue.txt index 3a5ac5d9b86b759bfc0e1d23f1df0a3d5cd30cce..dd05aed41c50b81790742957b210b21840918826 100644 --- a/public/biopet-tools/src/test/resources/flagstat_crosstrue.txt +++ b/public/biopet-tools/src/test/resources/flagstat_crosstrue.txt @@ -1,19 +1,3 @@ -==== - Biopet is built on top of GATK Queue for building bioinformatic - pipelines. It is mainly intended to support LUMC SHARK cluster which is running - SGE. But other types of HPC that are supported by GATK Queue (such as PBS) - should also be able to execute Biopet tools and pipelines. - - Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center - - Contact us at: sasc@lumc.nl - - A dual licensing mode is applied. The source code within this project that are - not part of GATK Queue is freely available for non-commercial use under an AGPL - license; For commercial users or users who do not want to follow the AGPL - license, please contact us to obtain a separate license. -==== - #1 #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #1 100.0000% 100.0000% 0.0000% 100.0000% 0.0000% 0.0000% 0.0000% 100.0000% 100.0000% 100.0000% 0.0000% 0.0000% 0.0000% 0.0000% #2 100.0000% 100.0000% 0.0000% 100.0000% 0.0000% 0.0000% 0.0000% 100.0000% 100.0000% 100.0000% 0.0000% 0.0000% 0.0000% 0.0000% diff --git a/public/biopet-tools/src/test/resources/flagstat_report.txt b/public/biopet-tools/src/test/resources/flagstat_report.txt index 6c536798b0d4ed6faa42b45e4915bc2699ba8071..acbe332a82a9d7c04c71e5c9ae74275b3c75b0cc 100644 --- a/public/biopet-tools/src/test/resources/flagstat_report.txt +++ b/public/biopet-tools/src/test/resources/flagstat_report.txt @@ -1,19 +1,3 @@ -==== - Biopet is built on top of GATK Queue for building bioinformatic - pipelines. It is mainly intended to support LUMC SHARK cluster which is running - SGE. But other types of HPC that are supported by GATK Queue (such as PBS) - should also be able to execute Biopet tools and pipelines. - - Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center - - Contact us at: sasc@lumc.nl - - A dual licensing mode is applied. The source code within this project that are - not part of GATK Queue is freely available for non-commercial use under an AGPL - license; For commercial users or users who do not want to follow the AGPL - license, please contact us to obtain a separate license. -==== - Number Total Flags Fraction Name #1 1 100.0000% All #2 1 100.0000% Mapped diff --git a/public/biopet-tools/src/test/resources/flagstat_summary.txt b/public/biopet-tools/src/test/resources/flagstat_summary.txt index fcb03781784b1a5e4472f7b85ff50ad22b8ee647..e7984915cab425c8bd94dd0a22eae60e0407f518 100644 --- a/public/biopet-tools/src/test/resources/flagstat_summary.txt +++ b/public/biopet-tools/src/test/resources/flagstat_summary.txt @@ -1,19 +1,3 @@ -==== - Biopet is built on top of GATK Queue for building bioinformatic - pipelines. It is mainly intended to support LUMC SHARK cluster which is running - SGE. But other types of HPC that are supported by GATK Queue (such as PBS) - should also be able to execute Biopet tools and pipelines. - - Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center - - Contact us at: sasc@lumc.nl - - A dual licensing mode is applied. The source code within this project that are - not part of GATK Queue is freely available for non-commercial use under an AGPL - license; For commercial users or users who do not want to follow the AGPL - license, please contact us to obtain a separate license. -==== - { "Duplicates" : 0, "NotPrimaryAlignment" : 0,