Rename num_qual_gte on reads to num_avg_qual_gte

8df7adf6 · bow · ce4db038 · 8df7adf6
Commit 8df7adf6 authored Jun 29, 2015 by bow
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala ...rk/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala +1 -1

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--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
@@ -312,7 +312,7 @@ object SeqStat extends ToolCommand {
          ("num_total", readStats.qual.sum),
          ("len_min", readStats.lengths.takeWhile(_ == 0).length),
          ("len_max", readStats.lengths.length - 1),
-          ("num_qual_gte", readQualHistoMap.toMap),
+          ("num_avg_qual_gte", readQualHistoMap.toMap),
          ("qual_encoding", phredEncoding.toString.toLowerCase)
        ))
      ))