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biopet.biopet
Commits
8df7adf6
Commit
8df7adf6
authored
Jun 29, 2015
by
bow
Browse files
Rename num_qual_gte on reads to num_avg_qual_gte
parent
ce4db038
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
View file @
8df7adf6
...
...
@@ -312,7 +312,7 @@ object SeqStat extends ToolCommand {
(
"num_total"
,
readStats
.
qual
.
sum
),
(
"len_min"
,
readStats
.
lengths
.
takeWhile
(
_
==
0
).
length
),
(
"len_max"
,
readStats
.
lengths
.
length
-
1
),
(
"num_qual_gte"
,
readQualHistoMap
.
toMap
),
(
"num_
avg_
qual_gte"
,
readQualHistoMap
.
toMap
),
(
"qual_encoding"
,
phredEncoding
.
toString
.
toLowerCase
)
))
))
...
...
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