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biopet.biopet
Commits
ce4db038
Commit
ce4db038
authored
Jun 27, 2015
by
bow
Browse files
Rename SeqStat in summary for consistency
parent
42334159
Changes
1
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public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
ce4db038
...
...
@@ -262,13 +262,13 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
val
seqstat_R1_after
=
SeqStat
(
this
,
R1
,
outDir
)
seqstat_R1_after
.
deps
=
deps_R1
add
(
seqstat_R1_after
)
addSummarizable
(
seqstat_R1_after
,
"seqstat_R1_
after
"
)
addSummarizable
(
seqstat_R1_after
,
"seqstat_R1_
qc
"
)
if
(
paired
)
{
val
seqstat_R2_after
=
SeqStat
(
this
,
R2
.
get
,
outDir
)
seqstat_R2_after
.
deps
=
deps_R2
add
(
seqstat_R2_after
)
addSummarizable
(
seqstat_R2_after
,
"seqstat_R2_
after
"
)
addSummarizable
(
seqstat_R2_after
,
"seqstat_R2_
qc
"
)
}
outputFiles
+=
(
chunk
+
"output_R1"
->
R1
)
...
...
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