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biopet.biopet
Commits
847b1265
Commit
847b1265
authored
May 13, 2016
by
Wai Yi Leung
Browse files
Remove empty constructs
parent
c2b3c276
Changes
2
Hide whitespace changes
Inline
Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
View file @
847b1265
...
...
@@ -38,7 +38,7 @@ class Cutadapt(root: Configurable, fastqc: Fastqc) extends nl.lumc.sasc.biopet.e
(
fastqc
.
foundAdapters
++
customAdapters
)
.
map
(
adapter
=>
adapter
.
seq
->
adapter
.
name
).
toMap
}
else
{
Map
.
empty
++
customAdapters
.
map
(
adapter
=>
adapter
.
seq
->
adapter
.
name
).
toMap
customAdapters
.
map
(
adapter
=>
adapter
.
seq
->
adapter
.
name
).
toMap
}
}
...
...
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala
View file @
847b1265
...
...
@@ -107,7 +107,7 @@ class QcCommand(val root: Configurable, val fastqc: Fastqc) extends BiopetComman
val
foundAdapters
=
if
(!
cutadapt
.
ignoreFastqcAdapters
)
{
fastqc
.
foundAdapters
.
map
(
_
.
seq
)
++
cutadapt
.
customAdapters
.
map
(
_
.
seq
)
}
else
{
Seq
.
empty
++
cutadapt
.
customAdapters
.
map
(
_
.
seq
)
cutadapt
.
customAdapters
.
map
(
_
.
seq
)
}
if
(
foundAdapters
.
nonEmpty
)
{
...
...
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