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biopet.biopet
Commits
81797e5a
Commit
81797e5a
authored
Sep 28, 2016
by
Peter van 't Hof
Browse files
Remove some old code
parent
6455b8d4
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/PrefixFastq.scala
View file @
81797e5a
...
...
@@ -48,20 +48,3 @@ class PrefixFastq(val root: Configurable) extends ToolCommandFunction {
required
(
"-o"
,
outputFastq
)
+
optional
(
"-s"
,
prefixSeq
)
}
object
PrefixFastq
{
/**
* Create a PrefixFastq class object with a sufix ".prefix.fastq" in the output folder
*
* @param root parent object
* @param input input file
* @param outputDir outputFolder
* @return PrefixFastq class object
*/
def
apply
(
root
:
Configurable
,
input
:
File
,
outputDir
:
String
)
:
PrefixFastq
=
{
val
prefixFastq
=
new
PrefixFastq
(
root
)
prefixFastq
.
inputFastq
=
input
prefixFastq
.
outputFastq
=
new
File
(
outputDir
,
input
.
getName
+
".prefix.fastq"
)
prefixFastq
}
}
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