From 81797e5afe318cadfdda5a855c6a34a04068a28d Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 28 Sep 2016 19:15:57 +0200
Subject: [PATCH] Remove some old code

---
 .../biopet/extensions/tools/PrefixFastq.scala   | 17 -----------------
 1 file changed, 17 deletions(-)

diff --git a/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/PrefixFastq.scala b/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/PrefixFastq.scala
index 59e0fb280..cb352e7b4 100644
--- a/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/PrefixFastq.scala
+++ b/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/PrefixFastq.scala
@@ -48,20 +48,3 @@ class PrefixFastq(val root: Configurable) extends ToolCommandFunction {
     required("-o", outputFastq) +
     optional("-s", prefixSeq)
 }
-
-object PrefixFastq {
-  /**
-   * Create a PrefixFastq class object with a sufix ".prefix.fastq" in the output folder
-   *
-   * @param root parent object
-   * @param input input file
-   * @param outputDir outputFolder
-   * @return PrefixFastq class object
-   */
-  def apply(root: Configurable, input: File, outputDir: String): PrefixFastq = {
-    val prefixFastq = new PrefixFastq(root)
-    prefixFastq.inputFastq = input
-    prefixFastq.outputFastq = new File(outputDir, input.getName + ".prefix.fastq")
-    prefixFastq
-  }
-}
-- 
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