Moved sample metrics to other directory

7f1d3bac · Peter van 't Hof · 3a1bd525 · 7f1d3bac
Commit 7f1d3bac authored Jun 25, 2015 by Peter van 't Hof
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala ...cala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala +1 -1

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--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
@@ -254,7 +254,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference {
        val bamMetrics = new BamMetrics(qscript)
        bamMetrics.sampleId = Some(sampleId)
        bamMetrics.inputBam = preProcessBam.get
-        bamMetrics.outputDir = sampleDir
+        bamMetrics.outputDir = new File(sampleDir, "metrics")
        bamMetrics.init
        bamMetrics.biopetScript
        addAll(bamMetrics.functions)