Commit 7f1d3bac authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Moved sample metrics to other directory

parent 3a1bd525
...@@ -254,7 +254,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference { ...@@ -254,7 +254,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference {
val bamMetrics = new BamMetrics(qscript) val bamMetrics = new BamMetrics(qscript)
bamMetrics.sampleId = Some(sampleId) bamMetrics.sampleId = Some(sampleId)
bamMetrics.inputBam = preProcessBam.get bamMetrics.inputBam = preProcessBam.get
bamMetrics.outputDir = sampleDir bamMetrics.outputDir = new File(sampleDir, "metrics")
bamMetrics.init bamMetrics.init
bamMetrics.biopetScript bamMetrics.biopetScript
addAll(bamMetrics.functions) addAll(bamMetrics.functions)
......
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