Commit 09c25863 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix on outputDir

parent 98db90f1
......@@ -47,7 +47,7 @@ class RunGubbins(val root: Configurable) extends BiopetCommandLineFunction {
for (t <- out) outputFiles ::= new File(outputDirectory + File.separator + prefix + t)
}
def cmdLine = required(executable) +
def cmdLine = required("cd", outputDirectory) + " && " + required(executable) +
optional("--outgroup", outgroup) +
optional("--starting_tree", startingTree) +
optional("--filter_percentage", filterPercentage) +
......
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