Move BiopetFramework to public maven project

pom.xml

protected/pom.xml

public/biopet-framework/.gitignore

public/biopet-framework/BiopetFramework.iml

public/biopet-framework/README.md

public/biopet-framework/examples/bam-metrics.json

public/biopet-framework/examples/biopet-defaults.json

public/biopet-framework/examples/flexiprep.json

.../biopet-framework/examples/gatk-benchmark-genotyping.json

public/biopet-framework/examples/gatk-genotypeing.json

public/biopet-framework/examples/gatk-pipeline.json

public/biopet-framework/examples/gatk-variantcalling.json

...ic/biopet-framework/examples/gatk-vcf-sample-compare.json

public/biopet-framework/examples/mapping.json

public/biopet-framework/examples/sage.json

public/biopet-framework/examples/shark_apps.json

public/biopet-framework/examples/summaryformat.json

public/biopet-framework/nb-configuration.xml

public/biopet-framework/nbactions-yamsvp.xml

public/biopet-framework/nbactions.xml