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Commit 793a34eb authored by bow's avatar bow
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Rename camel caps to underscore

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public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingReport.scala
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...@@ -66,7 +66,7 @@ trait MultisampleMappingReportTrait extends MultisampleReportBuilder { ...@@ -66,7 +66,7 @@ trait MultisampleMappingReportTrait extends MultisampleReportBuilder {
"After QC fastq files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp"), "After QC fastq files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp"),
"Bam files per lib" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp", Map("sampleLevel" -> false)), "Bam files per lib" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp", Map("sampleLevel" -> false)),
"Preprocessed bam files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp", "Preprocessed bam files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp",
Map("pipelineName" -> pipelineName, "fileTag" -> "preProcessBam"))), Map()) Map("pipelineName" -> pipelineName, "fileTag" -> "output_bam_preprocess"))), Map())
/** Single sample page */ /** Single sample page */
def samplePage(sampleId: String, args: Map[String, Any]): ReportPage = { def samplePage(sampleId: String, args: Map[String, Any]): ReportPage = {
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