Added thread correction

785d5a26 · Peter van 't Hof · af0d5e67 · 785d5a26
Commit 785d5a26 authored Nov 09, 2016 by Peter van 't Hof
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gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala ...nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala +1 -0

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--- a/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala
+++ b/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala
@@ -36,6 +36,7 @@ class GearsCentrifuge(val root: Configurable) extends QScript with SummaryQScrip
    centrifuge.report = Some(new File(outputDir, s"$outputName.centrifuge.report"))
    centrifuge.metFile = Some(centrifugeMetOutput)
    val centrifugeCmd = centrifuge | new Gzip(this) > centrifugeOutput
+    centrifugeCmd.threadsCorrection = -1
    add(centrifugeCmd)

    makeKreport("centrifuge", unique = false)