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biopet.biopet
Commits
785d5a26
Commit
785d5a26
authored
Nov 09, 2016
by
Peter van 't Hof
Browse files
Added thread correction
parent
af0d5e67
Changes
1
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gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala
View file @
785d5a26
...
...
@@ -36,6 +36,7 @@ class GearsCentrifuge(val root: Configurable) extends QScript with SummaryQScrip
centrifuge
.
report
=
Some
(
new
File
(
outputDir
,
s
"$outputName.centrifuge.report"
))
centrifuge
.
metFile
=
Some
(
centrifugeMetOutput
)
val
centrifugeCmd
=
centrifuge
|
new
Gzip
(
this
)
>
centrifugeOutput
centrifugeCmd
.
threadsCorrection
=
-
1
add
(
centrifugeCmd
)
makeKreport
(
"centrifuge"
,
unique
=
false
)
...
...
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