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Commit 785d5a26 authored by Peter van 't Hof's avatar Peter van 't Hof
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Added thread correction

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gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsCentrifuge.scala
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......@@ -36,6 +36,7 @@ class GearsCentrifuge(val root: Configurable) extends QScript with SummaryQScrip
centrifuge.report = Some(new File(outputDir, s"$outputName.centrifuge.report"))
centrifuge.metFile = Some(centrifugeMetOutput)
val centrifugeCmd = centrifuge | new Gzip(this) > centrifugeOutput
centrifugeCmd.threadsCorrection = -1
add(centrifugeCmd)
makeKreport("centrifuge", unique = false)
......
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