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biopet.biopet
Commits
af0d5e67
Commit
af0d5e67
authored
Nov 09, 2016
by
Peter van 't Hof
Browse files
Remove unused imports
parent
face5d0e
Changes
2
Hide whitespace changes
Inline
Side-by-side
mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
View file @
af0d5e67
...
...
@@ -14,12 +14,11 @@
*/
package
nl.lumc.sasc.biopet.pipelines.mapping
import
java.io.
{
File
,
FileOutputStream
}
import
java.io.
{
File
,
FileOutputStream
}
import
com.google.common.io.Files
import
nl.lumc.sasc.biopet.core.BiopetPipe
import
nl.lumc.sasc.biopet.extensions.centrifuge.Centrifuge
import
nl.lumc.sasc.biopet.extensions.kraken.Kraken
import
nl.lumc.sasc.biopet.pipelines.flexiprep.Fastqc
import
nl.lumc.sasc.biopet.utils.ConfigUtils
import
nl.lumc.sasc.biopet.utils.config.Config
...
...
@@ -27,7 +26,7 @@ import org.apache.commons.io.FileUtils
import
org.broadinstitute.gatk.queue.QSettings
import
org.scalatest.Matchers
import
org.scalatest.testng.TestNGSuite
import
org.testng.annotations.
{
AfterClass
,
BeforeClass
,
DataProvider
,
Test
}
import
org.testng.annotations.
{
AfterClass
,
BeforeClass
,
DataProvider
,
Test
}
/**
* Test class for [[Mapping]]
...
...
mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTest.scala
View file @
af0d5e67
...
...
@@ -19,14 +19,13 @@ import java.io.{File, FileOutputStream}
import
com.google.common.io.Files
import
nl.lumc.sasc.biopet.core.BiopetPipe
import
nl.lumc.sasc.biopet.extensions.centrifuge.Centrifuge
import
nl.lumc.sasc.biopet.extensions.kraken.Kraken
import
nl.lumc.sasc.biopet.extensions.picard.
{
MarkDuplicates
,
MergeSamFiles
}
import
nl.lumc.sasc.biopet.extensions.picard.
{
MarkDuplicates
,
MergeSamFiles
}
import
nl.lumc.sasc.biopet.utils.
{
ConfigUtils
,
Logging
}
import
nl.lumc.sasc.biopet.utils.config.Config
import
org.broadinstitute.gatk.queue.QSettings
import
org.scalatest.Matchers
import
org.scalatest.testng.TestNGSuite
import
org.testng.annotations.
{
DataProvider
,
Test
}
import
org.testng.annotations.
{
DataProvider
,
Test
}
/**
* Created by pjvanthof on 15/05/16.
...
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