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755c54b0

Commit 755c54b0 authored 9 years ago by Sander Bollen

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Merge branch 'fix-chunking' into 'develop'

Fix chunking

Chunking was broken in develop, this should fix it

See merge request !250

parents 98bc93d9 df83160f

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public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/CommandLineResources.scala 3 additions, 1 deletion

...scala/nl/lumc/sasc/biopet/core/CommandLineResources.scala
public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Zcat.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Zcat.scala
public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/config/Configurable.scala 3 additions, 3 deletions

...scala/nl/lumc/sasc/biopet/utils/config/Configurable.scala
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala 20 additions, 12 deletions

...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
public/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala 0 additions, 2 deletions

...a/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala
public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala 79 additions, 60 deletions

...scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala 0 additions, 22 deletions

...a/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala

with 106 additions and 101 deletions

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