Merge branch 'feature-FilterOnMappingQualityCarp' into 'develop'
Feature filter on mapping quality carp Currently testing the pipeline with real samples. Dry run seem to look okay! Pipeline tested, ready to merge! See merge request !248
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- public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/BuildBamIndex.scala 24 additions, 0 deletions...nl/lumc/sasc/biopet/extensions/picard/BuildBamIndex.scala
- public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsSort.scala 1 addition, 1 deletion...l/lumc/sasc/biopet/extensions/samtools/SamtoolsSort.scala
- public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsView.scala 2 additions, 2 deletions...l/lumc/sasc/biopet/extensions/samtools/SamtoolsView.scala
- public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala 34 additions, 5 deletions.../main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
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